Detailed information of SNP:
|
SNP ID:
sf0432093011(Gbrowse)
Chromosome: chr04 Position: 32093011 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 84.34% | 15.66% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 497 | 76.06% | 23.94% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 90.75% | 9.25% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432093011 | G->A | INTERGENIC | None |