Detailed information of SNP:
|
SNP ID:
sf0432097706(Gbrowse)
Chromosome: chr04 Position: 32097706 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 84.84% | 15.16% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 497 | 76.06% | 23.94% |
| Aus | 66 | 24.24% | 75.76% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 90.75% | 9.25% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432097706 | C->G | INTERGENIC | None |