Detailed information of SNP:
|
SNP ID:
sf0432098457(Gbrowse)
Chromosome: chr04 Position: 32098457 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 55.15% | 44.85% |
| All Indica | 798 | 90.48% | 9.52% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 374 | 90.37% | 9.63% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432098457 | A->G | INTERGENIC | None |