Detailed information of SNP:
|
SNP ID:
sf0432160072(Gbrowse)
Chromosome: chr04 Position: 32160072 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1374 | 97.96% | 2.04% |
| All Indica | 788 | 98.86% | 1.14% |
| All Japonica | 463 | 96.11% | 3.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 97.58% | 2.42% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 205 | 100.00% | 0.00% |
| Temperate Japonica | 307 | 94.46% | 5.54% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432160072 | A->G | LOC_Os04g54340(LOC_Os04g54340.1) | Non-Synonymous SNP |