Detailed information of SNP:
|
SNP ID:
sf0432217829(Gbrowse)
Chromosome: chr04 Position: 32217829 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 83.90% | 16.10% |
| All Indica | 798 | 86.97% | 13.03% |
| All Japonica | 496 | 85.28% | 14.72% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 67 | 47.76% | 52.24% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432217829 | A->G | INTERGENIC | None |