Detailed information of SNP:
|
SNP ID:
sf0432217840(Gbrowse)
Chromosome: chr04 Position: 32217840 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 82.20% | 17.80% |
| All Indica | 798 | 85.84% | 14.16% |
| All Japonica | 496 | 85.48% | 14.52% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 210 | 77.62% | 22.38% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 67 | 47.76% | 52.24% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432217840 | C->T | INTERGENIC | None |