Detailed information of SNP:
|
SNP ID:
sf0432233004(Gbrowse)
Chromosome: chr04 Position: 32233004 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 54.18% | 45.82% |
| All Indica | 799 | 73.84% | 26.16% |
| All Japonica | 489 | 19.02% | 80.98% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 213 | 64.79% | 35.21% |
| Indica Intermediate | 211 | 60.19% | 39.81% |
| Temperate Japonica | 331 | 14.20% | 85.80% |
| Tropical Japonica | 91 | 39.56% | 60.44% |
| Japonica Intermediate | 67 | 14.93% | 85.07% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432233004 | C->T | INTERGENIC | None |