Detailed information of SNP:
|
SNP ID:
sf0432241810(Gbrowse)
Chromosome: chr04 Position: 32241810 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 86.89% | 13.11% |
| All Indica | 776 | 87.37% | 12.63% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 195 | 85.13% | 14.87% |
| Indica Intermediate | 206 | 80.10% | 19.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432241810 | A->G | INTERGENIC | None |