Detailed information of SNP:
|
SNP ID:
sf0432242419(Gbrowse)
Chromosome: chr04 Position: 32242419 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1355 | 94.39% | 5.61% |
| All Indica | 758 | 94.99% | 5.01% |
| All Japonica | 490 | 97.14% | 2.86% |
| Aus | 51 | 56.86% | 43.14% |
| Indica I | 357 | 97.48% | 2.52% |
| Indica II | 206 | 95.15% | 4.85% |
| Indica Intermediate | 195 | 90.26% | 9.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 87 | 85.06% | 14.94% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432242419 | C->T | INTERGENIC | None |