Detailed information of SNP:
|
SNP ID:
sf0432242727(Gbrowse)
Chromosome: chr04 Position: 32242727 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 95.79% | 4.21% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 479 | 91.02% | 8.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 325 | 90.77% | 9.23% |
| Tropical Japonica | 86 | 95.35% | 4.65% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432242727 | T->C | INTERGENIC | None |