Detailed information of SNP:
|
SNP ID:
sf0432244907(Gbrowse)
Chromosome: chr04 Position: 32244907 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 95.15% | 4.85% |
| All Indica | 786 | 96.95% | 3.05% |
| All Japonica | 494 | 92.11% | 7.89% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 372 | 97.31% | 2.69% |
| Indica II | 209 | 97.61% | 2.39% |
| Indica Intermediate | 205 | 95.61% | 4.39% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 65 | 67.69% | 32.31% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432244907 | C->T | INTERGENIC | None |