Detailed information of SNP:
|
SNP ID:
sf0432250958(Gbrowse)
Chromosome: chr04 Position: 32250958 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1180 | 84.32% | 15.68% |
| All Indica | 569 | 72.76% | 27.24% |
| All Japonica | 492 | 96.14% | 3.86% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 279 | 79.21% | 20.79% |
| Indica II | 138 | 65.94% | 34.06% |
| Indica Intermediate | 152 | 67.11% | 32.89% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 84.62% | 15.38% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432250958 | A->G | LOC_Os04g54530(LOC_Os04g54530.1) | Non-Synonymous SNP |