Detailed information of SNP:
|
SNP ID:
sf0432258352(Gbrowse)
Chromosome: chr04 Position: 32258352 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 89.89% | 10.11% |
| All Indica | 797 | 89.84% | 10.16% |
| All Japonica | 496 | 95.97% | 4.03% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 210 | 81.90% | 18.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432258352 | G->A | INTERGENIC | None |