Detailed information of SNP:
|
SNP ID:
sf0432258662(Gbrowse)
Chromosome: chr04 Position: 32258662 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 51.06% | 48.94% |
| All Indica | 799 | 79.35% | 20.65% |
| All Japonica | 496 | 14.52% | 85.48% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 334 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432258662 | C->T | INTERGENIC | None |