Detailed information of SNP:
|
SNP ID:
sf0432261252(Gbrowse)
Chromosome: chr04 Position: 32261252 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 87.38% | 12.62% |
| All Indica | 775 | 87.61% | 12.39% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 194 | 86.08% | 13.92% |
| Indica Intermediate | 206 | 80.10% | 19.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432261252 | A->G | INTERGENIC | None |