Detailed information of SNP:
|
SNP ID:
sf0432261501(Gbrowse)
Chromosome: chr04 Position: 32261501 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 91.49% | 8.51% |
| All Indica | 791 | 92.41% | 7.59% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 66 | 43.94% | 56.06% |
| Indica I | 373 | 94.91% | 5.09% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 207 | 87.92% | 12.08% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432261501 | A->T | INTERGENIC | None |