Detailed information of SNP:
|
SNP ID:
sf0432261575(Gbrowse)
Chromosome: chr04 Position: 32261575 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 89.71% | 10.29% |
| All Indica | 799 | 89.86% | 10.14% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432261575 | T->C | INTERGENIC | None |