Detailed information of SNP:
|
SNP ID:
sf0432263973(Gbrowse)
Chromosome: chr04 Position: 32263973 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 74.72% | 25.28% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 490 | 41.02% | 58.98% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 329 | 28.88% | 71.12% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432263973 | G->A | LOC_Os04g54560(LOC_Os04g54560.1) | Non-Synonymous SNP |