Detailed information of SNP:
|
SNP ID:
sf0432265327(Gbrowse)
Chromosome: chr04 Position: 32265327 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1370 | 88.47% | 11.53% |
| All Indica | 767 | 88.40% | 11.60% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 56 | 25.00% | 75.00% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 186 | 89.25% | 10.75% |
| Indica Intermediate | 206 | 80.10% | 19.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432265327 | A->G | INTERGENIC | None |