Detailed information of SNP:
|
SNP ID:
sf0432281313(Gbrowse)
Chromosome: chr04 Position: 32281313 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 53.74% | 46.26% |
| All Indica | 797 | 83.81% | 16.19% |
| All Japonica | 497 | 14.89% | 85.11% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 209 | 78.47% | 21.53% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432281313 | C->T | INTERGENIC | None |