Detailed information of SNP:
|
SNP ID:
sf0432282472(Gbrowse)
Chromosome: chr04 Position: 32282472 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 64.65% | 35.35% |
| All Indica | 766 | 94.39% | 5.61% |
| All Japonica | 496 | 19.35% | 80.65% |
| Aus | 56 | 73.21% | 26.79% |
| Indica I | 373 | 91.96% | 8.04% |
| Indica II | 189 | 97.88% | 2.12% |
| Indica Intermediate | 204 | 95.59% | 4.41% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 37 | 59.46% | 40.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432282472 | A->G | INTERGENIC | None |