Detailed information of SNP:
|
SNP ID:
sf0432301139(Gbrowse)
Chromosome: chr04 Position: 32301139 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 85.40% | 14.60% |
| All Indica | 799 | 84.86% | 15.14% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432301139 | T->C | INTERGENIC | None |