Detailed information of SNP:
SNP ID:
sf0432320072(Gbrowse)
Chromosome: chr04 Position: 32320072 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1418 | 96.69% | 3.31% |
All Indica | 799 | 98.87% | 1.13% |
All Japonica | 496 | 95.16% | 4.84% |
Aus | 67 | 86.57% | 13.43% |
Indica I | 375 | 98.40% | 1.60% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 211 | 99.05% | 0.95% |
Temperate Japonica | 334 | 94.01% | 5.99% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 94.12% | 5.88% |
Group VI/Aromatic | 14 | 78.57% | 21.43% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0432320072 | A->G | LOC_Os04g54690(LOC_Os04g54690.1) | INTRON |