Detailed information of SNP:
|
SNP ID:
sf0432333299(Gbrowse)
Chromosome: chr04 Position: 32333299 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1331 | 94.06% | 5.94% |
| All Indica | 778 | 99.10% | 0.90% |
| All Japonica | 433 | 83.83% | 16.17% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 98.63% | 1.37% |
| Indica II | 207 | 100.00% | 0.00% |
| Indica Intermediate | 205 | 99.02% | 0.98% |
| Temperate Japonica | 275 | 75.27% | 24.73% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432333299 | T->C | LOC_Os04g54660(LOC_Os04g54660.1) | Non-Synonymous SNP |