Detailed information of SNP:
|
SNP ID:
sf0432337014(Gbrowse)
Chromosome: chr04 Position: 32337014 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 89.91% | 10.09% |
| All Indica | 797 | 89.21% | 10.79% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 373 | 93.03% | 6.97% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432337014 | T->G | LOC_Os04g54660(LOC_Os04g54660.1) | Non-Synonymous SNP |