Detailed information of SNP:
|
SNP ID:
sf0432338255(Gbrowse)
Chromosome: chr04 Position: 32338255 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 91.60% | 8.40% |
| All Indica | 790 | 91.27% | 8.73% |
| All Japonica | 495 | 95.96% | 4.04% |
| Aus | 63 | 57.14% | 42.86% |
| Indica I | 372 | 94.35% | 5.65% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 207 | 84.54% | 15.46% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 81.52% | 18.48% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432338255 | G->A | LOC_Os04g54670(LOC_Os04g54670.1) | Synonymous |