Detailed information of SNP:
|
SNP ID:
sf0432338264(Gbrowse)
Chromosome: chr04 Position: 32338264 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 91.07% | 8.93% |
| All Indica | 795 | 90.44% | 9.56% |
| All Japonica | 495 | 96.97% | 3.03% |
| Aus | 65 | 49.23% | 50.77% |
| Indica I | 372 | 93.82% | 6.18% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 83.70% | 16.30% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432338264 | C->T | LOC_Os04g54670(LOC_Os04g54670.1) | Synonymous |