Detailed information of SNP:
|
SNP ID:
sf0432338469(Gbrowse)
Chromosome: chr04 Position: 32338469 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1379 | 87.31% | 12.69% |
| All Indica | 794 | 87.91% | 12.09% |
| All Japonica | 472 | 92.37% | 7.63% |
| Aus | 60 | 35.00% | 65.00% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 210 | 88.57% | 11.43% |
| Indica Intermediate | 209 | 79.90% | 20.10% |
| Temperate Japonica | 322 | 94.41% | 5.59% |
| Tropical Japonica | 86 | 80.23% | 19.77% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432338469 | A->C | LOC_Os04g54670(LOC_Os04g54670.1) | Non-Synonymous SNP |