Detailed information of SNP:
|
SNP ID:
sf0432338810(Gbrowse)
Chromosome: chr04 Position: 32338810 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1383 | 79.68% | 20.32% |
| All Indica | 791 | 86.35% | 13.65% |
| All Japonica | 473 | 78.22% | 21.78% |
| Aus | 63 | 17.46% | 82.54% |
| Indica I | 372 | 91.40% | 8.60% |
| Indica II | 210 | 84.29% | 15.71% |
| Indica Intermediate | 209 | 79.43% | 20.57% |
| Temperate Japonica | 322 | 83.23% | 16.77% |
| Tropical Japonica | 91 | 68.13% | 31.87% |
| Japonica Intermediate | 60 | 66.67% | 33.33% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432338810 | T->C | LOC_Os04g54670(LOC_Os04g54670.1) | Synonymous |