Detailed information of SNP:
|
SNP ID:
sf0432338883(Gbrowse)
Chromosome: chr04 Position: 32338883 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 91.57% | 8.43% |
| All Indica | 795 | 90.82% | 9.18% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 63 | 53.97% | 46.03% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 208 | 83.65% | 16.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432338883 | C->G | LOC_Os04g54670(LOC_Os04g54670.1) | Non-Synonymous SNP |