Detailed information of SNP:
|
SNP ID:
sf0432339671(Gbrowse)
Chromosome: chr04 Position: 32339671 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 89.99% | 10.01% |
| All Indica | 798 | 89.35% | 10.65% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432339671 | G->A | LOC_Os04g54670(LOC_Os04g54670.1) | Synonymous |