Detailed information of SNP:
|
SNP ID:
sf0432339685(Gbrowse)
Chromosome: chr04 Position: 32339685 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 81.36% | 18.64% |
| All Indica | 798 | 85.34% | 14.66% |
| All Japonica | 496 | 84.07% | 15.93% |
| Aus | 66 | 21.21% | 78.79% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 212 | 77.83% | 22.17% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 334 | 87.13% | 12.87% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432339685 | A->G | LOC_Os04g54670(LOC_Os04g54670.1) | Non-Synonymous SNP |