Detailed information of SNP:
|
SNP ID:
sf0432355114(Gbrowse)
Chromosome: chr04 Position: 32355114 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 85.68% | 14.32% |
| All Indica | 792 | 85.10% | 14.90% |
| All Japonica | 496 | 95.36% | 4.64% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 209 | 78.47% | 21.53% |
| Indica Intermediate | 208 | 79.81% | 20.19% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 77.42% | 22.58% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432355114 | G->C | LOC_Os04g54710(LOC_Os04g54710.1) | Non-Synonymous SNP |