Detailed information of SNP:
|
SNP ID:
sf0432379022(Gbrowse)
Chromosome: chr04 Position: 32379022 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1331 | 80.62% | 19.38% |
| All Indica | 791 | 86.35% | 13.65% |
| All Japonica | 424 | 78.07% | 21.93% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 369 | 93.22% | 6.78% |
| Indica II | 212 | 79.72% | 20.28% |
| Indica Intermediate | 210 | 80.95% | 19.05% |
| Temperate Japonica | 303 | 83.50% | 16.50% |
| Tropical Japonica | 89 | 64.04% | 35.96% |
| Japonica Intermediate | 32 | 65.62% | 34.38% |
| Group VI/Aromatic | 10 | 90.00% | 10.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432379022 | T->C | LOC_Os04g54759(LOC_Os04g54759.1) | INTRON |