Detailed information of SNP:
|
SNP ID:
sf0432383628(Gbrowse)
Chromosome: chr04 Position: 32383628 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 56.74% | 43.26% |
| All Indica | 777 | 33.08% | 66.92% |
| All Japonica | 495 | 86.26% | 13.74% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 365 | 25.21% | 74.79% |
| Indica II | 206 | 43.20% | 56.80% |
| Indica Intermediate | 206 | 36.89% | 63.11% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 93 | 44.09% | 55.91% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432383628 | G->A | INTERGENIC | None |