Detailed information of SNP:
|
SNP ID:
sf0432383989(Gbrowse)
Chromosome: chr04 Position: 32383989 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1344 | 87.20% | 12.80% |
| All Indica | 758 | 91.56% | 8.44% |
| All Japonica | 480 | 84.17% | 15.83% |
| Aus | 52 | 51.92% | 48.08% |
| Indica I | 369 | 94.04% | 5.96% |
| Indica II | 195 | 89.74% | 10.26% |
| Indica Intermediate | 194 | 88.66% | 11.34% |
| Temperate Japonica | 331 | 92.15% | 7.85% |
| Tropical Japonica | 83 | 84.34% | 15.66% |
| Japonica Intermediate | 66 | 43.94% | 56.06% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432383989 | C->T | INTERGENIC | None |