Detailed information of SNP:



SNP ID: sf0432383989(Gbrowse)

Chromosome: chr04

Position: 32383989
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1344 87.20% 12.80%
All Indica758 91.56% 8.44%
All Japonica480 84.17% 15.83%
Aus52 51.92% 48.08%
Indica I369 94.04% 5.96%
Indica II195 89.74% 10.26%
Indica Intermediate194 88.66% 11.34%
Temperate Japonica331 92.15% 7.85%
Tropical Japonica83 84.34% 15.66%
Japonica Intermediate66 43.94% 56.06%
Group VI/Aromatic14 71.43% 28.57%
Intermediate40 92.50% 7.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0432383989 C->T INTERGENIC None