Detailed information of SNP:
|
SNP ID:
sf0432384282(Gbrowse)
Chromosome: chr04 Position: 32384282 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 82.93% | 17.07% |
| All Indica | 794 | 87.28% | 12.72% |
| All Japonica | 496 | 81.45% | 18.55% |
| Aus | 66 | 40.91% | 59.09% |
| Indica I | 373 | 90.08% | 9.92% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 209 | 80.86% | 19.14% |
| Temperate Japonica | 334 | 91.32% | 8.68% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432384282 | C->T | INTERGENIC | None |