Detailed information of SNP:
|
SNP ID:
sf0432403103(Gbrowse)
Chromosome: chr04 Position: 32403103 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 71.63% | 28.37% |
| All Indica | 799 | 85.48% | 14.52% |
| All Japonica | 496 | 59.27% | 40.73% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 64.48% | 35.52% |
| Tropical Japonica | 93 | 65.59% | 34.41% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432403103 | C->T | INTERGENIC | None |