Detailed information of SNP:
|
SNP ID:
sf0432406471(Gbrowse)
Chromosome: chr04 Position: 32406471 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 72.99% | 27.01% |
| All Indica | 799 | 87.98% | 12.02% |
| All Japonica | 497 | 58.15% | 41.85% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 63.88% | 36.12% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432406471 | A->C | LOC_Os04g54810(LOC_Os04g54810.1) | INTRON |