Detailed information of SNP:
|
SNP ID:
sf0432407078(Gbrowse)
Chromosome: chr04 Position: 32407078 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 72.76% | 27.24% |
| All Indica | 798 | 88.10% | 11.90% |
| All Japonica | 497 | 58.15% | 41.85% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 210 | 81.90% | 18.10% |
| Temperate Japonica | 335 | 64.18% | 35.82% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432407078 | A->G | LOC_Os04g54810(LOC_Os04g54810.1) | INTRON |