Detailed information of SNP:
|
SNP ID:
sf0432413122(Gbrowse)
Chromosome: chr04 Position: 32413122 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 86.87% | 13.13% |
| All Indica | 797 | 86.45% | 13.55% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 209 | 77.99% | 22.01% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432413122 | A->G | INTERGENIC | None |