Detailed information of SNP:
|
SNP ID:
sf0432439885(Gbrowse)
Chromosome: chr04 Position: 32439885 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 81.45% | 18.55% |
| All Indica | 799 | 76.85% | 23.15% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432439885 | A->G | INTERGENIC | None |