Detailed information of SNP:
|
SNP ID:
sf0432445131(Gbrowse)
Chromosome: chr04 Position: 32445131 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 81.95% | 18.05% |
| All Indica | 799 | 76.85% | 23.15% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 68.08% | 31.92% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432445131 | G->A | INTERGENIC | None |