Detailed information of SNP:
|
SNP ID:
sf0432445218(Gbrowse)
Chromosome: chr04 Position: 32445218 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 84.71% | 15.29% |
| All Indica | 782 | 79.67% | 20.33% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 62 | 48.39% | 51.61% |
| Indica I | 373 | 86.86% | 13.14% |
| Indica II | 208 | 71.15% | 28.85% |
| Indica Intermediate | 201 | 75.12% | 24.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432445218 | T->C | INTERGENIC | None |