Detailed information of SNP:
|
SNP ID:
sf0432448813(Gbrowse)
Chromosome: chr04 Position: 32448813 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 65.48% | 34.52% |
| All Indica | 795 | 94.97% | 5.03% |
| All Japonica | 497 | 21.73% | 78.27% |
| Aus | 61 | 59.02% | 40.98% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 335 | 12.54% | 87.46% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 12 | 0.00% | 100.00% |
| Intermediate | 37 | 51.35% | 48.65% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432448813 | T->A | LOC_Os04g54870(LOC_Os04g54870.2) | UTR_3_PRIME |
| sf0432448813 | T->A | LOC_Os04g54870(LOC_Os04g54870.1) | UTR_3_PRIME |
| sf0432448813 | T->A | LOC_Os04g54860(LOC_Os04g54860.1) | UTR_3_PRIME |