Detailed information of SNP:
|
SNP ID:
sf0432453506(Gbrowse)
Chromosome: chr04 Position: 32453506 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1320 | 96.44% | 3.56% |
| All Indica | 769 | 99.48% | 0.52% |
| All Japonica | 431 | 90.49% | 9.51% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 361 | 99.72% | 0.28% |
| Indica II | 208 | 99.52% | 0.48% |
| Indica Intermediate | 200 | 99.00% | 1.00% |
| Temperate Japonica | 273 | 85.71% | 14.29% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432453506 | T->C | INTERGENIC | None |