Detailed information of SNP:
|
SNP ID:
sf0432455242(Gbrowse)
Chromosome: chr04 Position: 32455242 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 85.30% | 14.70% |
| All Indica | 792 | 81.06% | 18.94% |
| All Japonica | 496 | 95.77% | 4.23% |
| Aus | 66 | 50.00% | 50.00% |
| Indica I | 374 | 87.97% | 12.03% |
| Indica II | 212 | 72.64% | 27.36% |
| Indica Intermediate | 206 | 77.18% | 22.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 78.49% | 21.51% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432455242 | C->T | INTERGENIC | None |