Detailed information of SNP:
|
SNP ID:
sf0432472043(Gbrowse)
Chromosome: chr04 Position: 32472043 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 54.98% | 45.02% |
| All Indica | 797 | 27.73% | 72.27% |
| All Japonica | 495 | 90.91% | 9.09% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 21.60% | 78.40% |
| Indica II | 212 | 33.49% | 66.51% |
| Indica Intermediate | 210 | 32.86% | 67.14% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 60.22% | 39.78% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432472043 | A->T | INTERGENIC | None |