Detailed information of SNP:
|
SNP ID:
sf0432475274(Gbrowse)
Chromosome: chr04 Position: 32475274 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 91.74% | 8.26% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 497 | 78.07% | 21.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 80.00% | 20.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432475274 | C->G | INTERGENIC | None |