Detailed information of SNP:
|
SNP ID:
sf0432481686(Gbrowse)
Chromosome: chr04 Position: 32481686 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 87.92% | 12.08% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 494 | 71.26% | 28.74% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 71.08% | 28.92% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432481686 | C->T | LOC_Os04g54910(LOC_Os04g54910.1) | Non-Synonymous SNP |